SNP Profiles matching UF 667

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 Key

 1234567891011121314
_Input profile
GGATACGTCTAACCAGCCAAGGAGAACC
1._RUQ_1059
__ACGTCCAACCAACCAA_AGAACT
2._RUQ_1081
__ACGTCTACCCAGCCAA_AGACCT
3._RUQ_952
__ACGTCTAACCGGCCAA_AAAACT
4._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
5._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
6._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
7._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
8._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
9._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
10._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
11._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
12._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
13._PA_137_[PER]
GGATACGTCTAACCAGCCAAGGAGACCT
14._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
15._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
16._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
17._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
18._GC-05-009-1-09
GGATACGTCTAACCAGCCAAGGAGACCT
19._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
20._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
21._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
22._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
23._GC-05-117-3-19
GGATACGTCTAACCAGCCAAGGAGACCT
24._RUQ_1081
GGATACGTCTACCCAGCCAAGGAGACCT
25._PA_137_[PER]
GGATACGTCTACCCAGCCAAGGAGACCT
26._PA_291_[PER]
GGATACGGCTAACCGGCCAAGGAGAACC
27._PA_137_[PER]
GGATACGTCTAC_AGCCAAGGAGACCT
28._PA_137_[PER]
GGATACGTCTAC_AGCCAAGGAGACCT
29._PA_137_[PER]
GGATACGTCTAC-AGCCAAGGAGACCT
30._RUQ_1081
GGATACGTCTACCCAGCCAAGGAGACCT
31._RUQ_36
GGATACGTCTACCCAGCCAAGGAGACCT
 1516171819202122232425262728
_Input profile
GGCGCCTTAAGGGGCCCTCGAACCAGCC
1._RUQ_1059
GGCGCCTT_GGGGCC____AGCC
2._RUQ_1081
GGCGCCTT_GGGGCC____AGCC
3._RUQ_952
GGCGCCTT_GGGGCC____AGCC
4._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
5._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
6._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
7._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
8._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
9._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
10._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
11._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
12._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
13._PA_137_[PER]
GGCGCCTTAGGGGGCCCTCGAACTAGCC
14._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
15._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
16._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
17._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
18._GC-05-009-1-09
GGCGCCTTAGGGGGCCCTCGAACTAGCC
19._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
20._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
21._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
22._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
23._GC-05-117-3-19
GGCGCCTTAGGGGGCCCTCGAACTAGCC
24._RUQ_1081
GGCGCCTTAAGGGGCCCTCGAACTAGCC
25._PA_137_[PER]
GGCGCCTTAAGGGGCCCTCGAACTAGCC
26._PA_291_[PER]
GGGGCCTTAA-GGCCCTGGAACTGGCC
27._PA_137_[PER]
GGCGCCTTAAGGGGCCCTCGAACTAGCC
28._PA_137_[PER]
GGCGCCTTAAGGGGCCCTCGAACTAGCC
29._PA_137_[PER]
GGCGCCTTAA-GGCCCTCGAACTAGCC
30._RUQ_1081
GGCGCCCTAAGGGGCCCTCGAACTAGCC
31._RUQ_36
GGCGCCCTAAGGGGCCCTCGAACTAGCC
 293031323334353637383940  
_Input profile
GGAACCCCTTTTCCTTCTCGGGCCX_XX_X
1._RUQ_1059
____TT___CTGGGG_X_XX_X
2._RUQ_1081
____TT___CTCCGG_X_XX_X
3._RUQ_952
____TT___CTGGGG_X_XX_X
4._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
5._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
6._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
7._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
8._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
9._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
10._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
11._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
12._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
13._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
14._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
15._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
16._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
17._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
18._GC-05-009-1-09
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
19._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
20._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
21._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
22._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
23._GC-05-117-3-19
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
24._RUQ_1081
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
25._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
26._PA_291_[PER]
GGAACCCCTTCTCCTTCTCGGGCCX_XX_X
27._PA_137_[PER]
GGAA_CCTTCTACTTCTCCGGCCX_XX_X
28._PA_137_[PER]
GGAA_CCTTCTACTTCTCCGGCCX_XX_X
29._PA_137_[PER]
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
30._RUQ_1081
GGAACCCCTTCTACTTCTCCGGCCX_XX_X
31._RUQ_36
GGAACCCCTTCTACTTCTCCGGCCX_XX_X

Input profile: UF_667

 
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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 292 I-042
 Dapeng Zhang, 2016

1._PA_121_[PER] RUQ_1059

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._PA_137_[PER] RUQ_1081

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._PA_289_[PER] RUQ_952

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

5._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

6._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

7._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

8._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

9._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

10._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

11._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

12._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

13._PA_137_[PER]

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

17._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_137_[PER] GC-05-009-1-09

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

20._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

22._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

23._PA_137_[PER] GC-05-117-3-19

91.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

24._PA_137_[PER] RUQ_1081

91.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

25._PA_137_[PER]

91.3 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

26._PA_291_[PER]

91 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2014

27._PA_137_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

28._PA_137_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

29._PA_137_[PER]

90.8 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

30._PA_137_[PER] RUQ_1081

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_137_[PER] RUQ_36

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520